Package: ProbBreed 1.0.4.9

ProbBreed: Probability Theory for Selecting Candidates in Plant Breeding

Use probability theory under the Bayesian framework for calculating the risk of selecting candidates in a multi-environment context. Contained are functions used to fit a Bayesian multi-environment model (based on the available presets), extract posterior values and maximum posterior values, compute the variance components, check the model’s convergence, and calculate the probabilities. For both across and within-environments scopes, the package computes the probability of superior performance and the pairwise probability of superior performance. Furthermore, the probability of superior stability and the pairwise probability of superior stability across environments is estimated. A joint probability of superior performance and stability is also provided.

Authors:Saulo Chaves [aut, cre], Kaio Dias [aut, cph], Matheus Krause [aut]

ProbBreed_1.0.4.9.tar.gz
ProbBreed_1.0.4.9.zip(r-4.7)ProbBreed_1.0.4.9.zip(r-4.6)ProbBreed_1.0.4.9.zip(r-4.5)
ProbBreed_1.0.4.9.tgz(r-4.6-x86_64)ProbBreed_1.0.4.9.tgz(r-4.6-arm64)ProbBreed_1.0.4.9.tgz(r-4.5-x86_64)ProbBreed_1.0.4.9.tgz(r-4.5-arm64)
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manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
ProbBreed/json (API)

# Install 'ProbBreed' in R:
install.packages('ProbBreed', repos = c('https://saulo-chaves.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/saulo-chaves/probbreed/issues

Pkgdown/docs site:https://saulo-chaves.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • maize - Maize real dataset
  • soy - Soybean real dataset
  • soy_pat - Soybean Pan-African Trials data set

On CRAN:

Conda:

cpp

4.61 score 9 stars 4 scripts 248 downloads 4 exports 48 dependencies

Last updated from:5d28b656d8. Checks:12 OK, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK1047
linux-devel-x86_64OK972
source / vignettesOK941
linux-release-arm64OK1054
linux-release-x86_64OK1044
macos-release-arm64OK899
macos-release-x86_64OK1825
macos-oldrel-arm64OK716
macos-oldrel-x86_64OK1946
windows-develOK1399
windows-releaseOK1541
windows-oldrelOK1611
wasm-releaseFAIL143

Exports:bayes_metbpsiextr_outsprob_sup

Dependencies:abindbackportsBHcallrcheckmateclicpp11descdistributionalfarvergenericsggplot2gluegridExtragtableinlineisobandlabelinglifecycleloomagrittrmatrixStatsnumDerivotelpillarpkgbuildpkgconfigposteriorprocessxpsQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelrlangrstanrstantoolsS7scalesStanHeaderstensorAtibbleutf8vctrsviridisLitewithr