Package: ProbBreed 1.0.4.1
ProbBreed: Probability Theory for Selecting Candidates in Plant Breeding
Use probability theory under the Bayesian framework for calculating the risk of selecting candidates in a multi-environment context. Contained are functions used to fit a Bayesian multi-environment model (based on the available presets), extract posterior values and maximum posterior values, compute the variance components, check the model’s convergence, and calculate the probabilities. For both across and within-environments scopes, the package computes the probability of superior performance and the pairwise probability of superior performance. Furthermore, the probability of superior stability and the pairwise probability of superior stability across environments is estimated. A joint probability of superior performance and stability is also provided.
Authors:
ProbBreed_1.0.4.1.tar.gz
ProbBreed_1.0.4.1.zip(r-4.5)ProbBreed_1.0.4.1.zip(r-4.4)ProbBreed_1.0.4.1.zip(r-4.3)
ProbBreed_1.0.4.1.tgz(r-4.4-arm64)ProbBreed_1.0.4.1.tgz(r-4.4-x86_64)ProbBreed_1.0.4.1.tgz(r-4.3-arm64)ProbBreed_1.0.4.1.tgz(r-4.3-x86_64)
ProbBreed_1.0.4.1.tar.gz(r-4.5-noble)ProbBreed_1.0.4.1.tar.gz(r-4.4-noble)
ProbBreed_1.0.4.1.tgz(r-4.4-emscripten)ProbBreed_1.0.4.1.tgz(r-4.3-emscripten)
ProbBreed.pdf |ProbBreed.html✨
ProbBreed/json (API)
NEWS
| # Install 'ProbBreed' in R: |
| install.packages('ProbBreed', repos = c('https://saulo-chaves.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/saulo-chaves/probbreed/issues
Last updated 3 days agofrom:84b28561c7
Exports:bayes_metextr_outsprob_sup
Dependencies:abindbackportsBHcallrcheckmateclicolorspacedescdistributionalfansifarvergenericsggplot2gluegridExtragtableinlineisobandlabelinglatticelifecycleloomagrittrMASSMatrixmatrixStatsmgcvmunsellnlmenumDerivpillarpkgbuildpkgconfigposteriorprocessxpsQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelrlangrstanrstantoolsscalesStanHeaderstensorAtibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Bayesian model for multi-environment trials | bayes_met |
| Extract outputs from 'stanfit' objects obtained from bayes_met | extr_outs |
| Maize real data set | maize |
| Plots for the 'extr' object | plot.extr |
| Plots for the 'probsup' object | plot.probsup |
| Print an object of class 'extr' | print.extr |
| Print an object of class 'probsup' | print.probsup |
| Probabilities of superior performance and stability | prob_sup |
| Soybean real data set | soy |
