Package: ProbBreed 1.0.4.9

ProbBreed: Probability Theory for Selecting Candidates in Plant Breeding

Use probability theory under the Bayesian framework for calculating the risk of selecting candidates in a multi-environment context. Contained are functions used to fit a Bayesian multi-environment model (based on the available presets), extract posterior values and maximum posterior values, compute the variance components, check the model’s convergence, and calculate the probabilities. For both across and within-environments scopes, the package computes the probability of superior performance and the pairwise probability of superior performance. Furthermore, the probability of superior stability and the pairwise probability of superior stability across environments is estimated. A joint probability of superior performance and stability is also provided.

Authors:Saulo Chaves [aut, cre], Kaio Dias [aut, cph], Matheus Krause [aut]

ProbBreed_1.0.4.9.tar.gz
ProbBreed_1.0.4.9.zip(r-4.7)ProbBreed_1.0.4.9.zip(r-4.6)ProbBreed_1.0.4.9.zip(r-4.5)
ProbBreed_1.0.4.9.tgz(r-4.6-x86_64)ProbBreed_1.0.4.9.tgz(r-4.6-arm64)ProbBreed_1.0.4.9.tgz(r-4.5-x86_64)ProbBreed_1.0.4.9.tgz(r-4.5-arm64)
ProbBreed_1.0.4.9.tar.gz(r-4.7-arm64)ProbBreed_1.0.4.9.tar.gz(r-4.7-x86_64)ProbBreed_1.0.4.9.tar.gz(r-4.6-arm64)ProbBreed_1.0.4.9.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html
card.svg |card.png
ProbBreed/json (API)
NEWS

# Install 'ProbBreed' in R:
install.packages('ProbBreed', repos = c('https://saulo-chaves.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/saulo-chaves/probbreed/issues

Pkgdown/docs site:https://saulo-chaves.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • maize - Maize real dataset
  • soy - Soybean real dataset
  • soy_pat - Soybean Pan-African Trials data set

On CRAN:

Conda:

cpp

4.61 score 9 stars 4 scripts 224 downloads 4 exports 47 dependencies

Last updated from:5d28b656d8. Checks:12 OK, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK1059
linux-devel-x86_64OK977
source / vignettesOK789
linux-release-arm64OK1000
linux-release-x86_64OK1018
macos-release-arm64OK728
macos-release-x86_64OK1754
macos-oldrel-arm64OK643
macos-oldrel-x86_64OK2051
windows-develOK1628
windows-releaseOK1279
windows-oldrelOK1605
wasm-releaseFAIL171

Exports:bayes_metbpsiextr_outsprob_sup

Dependencies:abindbackportsBHcallrcheckmateclicpp11descdistributionalfarvergenericsggplot2gluegridExtragtableinlineisobandlabelinglifecycleloomagrittrmatrixStatsnumDerivpillarpkgbuildpkgconfigposteriorprocessxpsQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelrlangrstanrstantoolsS7scalesStanHeaderstensorAtibbleutf8vctrsviridisLitewithr