Package: ProbBreed 1.0.4.4

ProbBreed: Probability Theory for Selecting Candidates in Plant Breeding

Use probability theory under the Bayesian framework for calculating the risk of selecting candidates in a multi-environment context. Contained are functions used to fit a Bayesian multi-environment model (based on the available presets), extract posterior values and maximum posterior values, compute the variance components, check the model’s convergence, and calculate the probabilities. For both across and within-environments scopes, the package computes the probability of superior performance and the pairwise probability of superior performance. Furthermore, the probability of superior stability and the pairwise probability of superior stability across environments is estimated. A joint probability of superior performance and stability is also provided.

Authors:Saulo Chaves [aut, cre], Kaio Dias [aut, cph], Matheus Krause [aut]

ProbBreed_1.0.4.4.tar.gz
ProbBreed_1.0.4.4.zip(r-4.5)ProbBreed_1.0.4.4.zip(r-4.4)ProbBreed_1.0.4.4.zip(r-4.3)
ProbBreed_1.0.4.4.tgz(r-4.4-x86_64)ProbBreed_1.0.4.4.tgz(r-4.4-arm64)ProbBreed_1.0.4.4.tgz(r-4.3-x86_64)ProbBreed_1.0.4.4.tgz(r-4.3-arm64)
ProbBreed_1.0.4.4.tar.gz(r-4.5-noble)ProbBreed_1.0.4.4.tar.gz(r-4.4-noble)
ProbBreed.pdf |ProbBreed.html
ProbBreed/json (API)
NEWS

# Install 'ProbBreed' in R:
install.packages('ProbBreed', repos = c('https://saulo-chaves.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/saulo-chaves/probbreed/issues

Pkgdown site:https://saulo-chaves.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • maize - Maize real data set
  • soy - Soybean real data set

On CRAN:

cpp

4.38 score 8 stars 4 scripts 612 downloads 3 exports 53 dependencies

Last updated 2 months agofrom:9a3184b52c. Checks:3 OK, 6 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 09 2025
R-4.5-win-x86_64OKJan 09 2025
R-4.5-linux-x86_64OKJan 09 2025
R-4.4-win-x86_64NOTEJan 09 2025
R-4.4-mac-x86_64NOTEJan 09 2025
R-4.4-mac-aarch64NOTEJan 09 2025
R-4.3-win-x86_64NOTEJan 09 2025
R-4.3-mac-x86_64NOTEJan 09 2025
R-4.3-mac-aarch64NOTEJan 09 2025

Exports:bayes_metextr_outsprob_sup

Dependencies:abindbackportsBHcallrcheckmateclicolorspacedescdistributionalfansifarvergenericsggplot2gluegridExtragtableinlineisobandlabelinglatticelifecycleloomagrittrMASSMatrixmatrixStatsmgcvmunsellnlmenumDerivpillarpkgbuildpkgconfigposteriorprocessxpsQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelrlangrstanrstantoolsscalesStanHeaderstensorAtibbleutf8vctrsviridisLitewithr